All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Tahara, T., Yamamoto, E., Madireddi, P., Suzuki, H., Maruyama, R., Chung, W., Garriga, J., Jelinek, J., Yamano, H.O., Sugai. T., et al. (2014) Colorectal carcinomas with CpG island methylator phenotype 1 frequently contain mutations in chromatin regulators. Gastroenterology. 146(2):530–538.e5. View PubMed abstract.
    Brooks SA, Brannon AR, Parker JS, Fisher JC, Sen O, Kattan MW, Hakimi AA, Hsieh JJ, Choueiri TK, Tamboli P, et al. (2014) ClearCode34: a prognostic risk predictor for localized clear cell renal cell carcinoma. Eur Urol. doi: 10.1016/j.eururo.2014.02.035. View PubMed abstract.
    Yang, Y., Han, L., Yuan, Y., Li, J., Hei, N., and Liang, H. (2014) Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types. Nat Commun. 5:3231. View PubMed abstract.
    * The Cancer Genome Atlas Research Network (2014) Comprehensive molecular characterization of urothelial bladder carcinoma. Nature. doi: 10.1038/nature12965. Read the full article.
    Schramek, D., Sendoel, A., Segal, J.P., Beronja, S., Heller, E., Oristian, D., Reva, B. and Fuchs, E. (2014) Direct in vivo RNAi screen unveils myosin Iia as a tumor suppressor of squamous cell carcinomas. Science. doi:  10.1126/science.1248627. Read the full article.
    Kechavarzi, B., and Janga, S.C. (2014) Dissecting the expression landscape of RNA-binding proteins in human cancers. Genome Biol. 15(1):R14. Read the full article.
    * The Cancer Genome Atlas Research Network (2014) Comprehensive molecular profiling of lung adenocarcinoma. Nature. 511543-550. Read the full article.
    Li, Q., Seo, J., Stranger, B., McKenna, A., Pe'er, I., LaFramboise, T., Brown, M., Tyekucheva, S. and Freedman, M.L. (2014) A novel eQTL-based analysis reveals the biology of breast cancer risk loci. Cell. doi:  10.1016/j.cell.2012.12.034. Read the full article.
    Hakimi, A.A., Furberg, H., Zabor, E.C., Jacobsen, A., Schultz, N., Ciriello, G., Mikklineni, N., Fiegoli, B., Kim, P.H., Voss, M.H., et al. (2013) An epidemiologic and genomic investigation into the obesity paradox in renal cell carcinoma. J Natl Cancer Inst. 105(24):1862-1870. View PubMed abstract.
    Wirsching, H.G., Krishnan, S., Florea, A.M., Frei, K., Krayenbühl, N., Hasenbach, K., Reifenberger, G., Weller, M., and Tabatabai, G. (2013) Thymosin beta 4 gene silencing decreases stemness and invasiveness in glioblastoma. Brain. 137(Pt 2):433-448. View PubMed abstract.
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