This list is no longer being updated.

All data generated by the TCGA Research Network are open to the public through the Genomic Data Commons (GDC).

Below are examples of publications that leverage TCGA data in various ways.

    Paugh, B.S., Qu, C., Jones, C., Liu, Z., Adamowicz-Brice, M., Zhang, J., Bax, D.H., Coyle, B., Barrow, J., Hargrave, D., et al. (2010) Integrated molecular genetic profiling of pediatric high-grade gliomas reveals key differences with the adult disease. J Clin Oncol. 28(18):3061-3068. Read the full article.
    Wu, G., Feng, X. and Stein, L. (2010) A human functional protein interaction network and its application to cancer data analysis. Genome Biol. 11(5):R53. Read the full article.
    Zheng, H., Ying, H., Wiedemeyer, R., Yan, H., Quayle, S.N., Ivanova, E.V., Paik, J.H., Zhang, H., Xiao, Y., Perry, S.R., et al. (2010) PLAGL2 regulates Wnt signaling to impede differentiation in neural stem cells and gliomas. Cancer Cell. 17(5):497-509. View author manuscript.
    * Noushmehr, H., Weisenberger, D.J., Diefes, K., Phillips, H.S., Pujara, K., Berman, B.P., Pan F., Pelloski, K.E., Suhmar, E.P., Bhat, K.P., et al. (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell. 17(5):510-522. View author manuscript | View associated data files.
    Creighton, C.J., Fountain, M.D., Yu, Z., Nagaraja, A.K., Zhu, H., Khan, M., Olokpa, E., Zariff, A., Gunaratne, P.H., Matzuk, M.M., et al. (2010) Molecular profiling uncovers a p53-associated role for microRNA-31 in inhibiting the proliferation of serous ovarian carcinomas and other cancers. Cancer Res. 70(5):1906-1915. Read the full article.
    Hjelmeland, A.B., Wu, Q., Wickman, S., Eyler, C., Heddleston, J., Shi, Q., Lathia, J.D., Macswords, J., Lee, J., McLendon, R.E., et al. (2010) Targeting A20 decreases glioma stem cell survival and tumor growth. PLoS Biol. 8(2):e1000319. Read the full article.
    Gundem, G., Perez-Llamas, C., Jene-Sanz, A., Kedzierska, A., Islam, A., Deu-Pons, J., Furney, S.J. and Lopez-Bigas, N. (2010) IntOGen: Integration and data mining of multidimensional oncogenomic data. Nature Methods. 7(2):92-93. View Pubmed citation.
    * Verhaak, R.G., Hoadley, K.A., Purdom, E., Wang, V., Qi, Y., Wilkerson, M.D., Miller, C.R., Ding, L., Golub, T., Mesirov, J.P., Alexe, G., et al. (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell. 17(1):98-110. View author manuscript | View associated data files.
    Veeriah, S., Taylor, B.S., Meng, S., Fang, F., Yilmaz, E., Vivanco, I., Janakiraman, M., Schultz, N., Hanrahan, A.J., Pao, W., et al. (2010) Somatic mutations of the Parkinson's disease-associated gene PARK2 in glioblastoma and other human malignancies. Nat Genet. 42(1):77-82. Read the full article.
    Gravendeel, L.A., Kouwenhoven, M.C., Gevaert, O., de Rooi, J.J., Stubbs, A.P., Duijm, J.E., Daemen, A., Bleeker, F.E., Bralten, L.B., Kloosterhof, N.K., et al. (2009) Intrinsic gene expression profiles of gliomas are a better predictor of survival than histology. Cancer Res. 69(23):9065-9072. Read the full article.
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