All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Fackler, M.J., Lopez Bujanda, Z., Umbricht, C., Teo, W.W., Cho, S., Zhang, Z., Visvanathan, K., Jeter, S., Argani, P., Wang, C., et al. (2014) Novel methylated biomarkers and a robust assay to detect circulating tumor DNA in metastatic breast cancer. Cancer Res. 74(8):2160-2170. View PubMed abstract.
    Qian, J., Kong, X., Deng, N., Tan, P., Chen, H., Wang, J., Li, Z., Hu, Y., Zou, W., Xu, J., et al. (2014) OCT1 is a determinant of synbindin-related ERK signalling with independent prognostic significance in gastric cancer. Gut. doi: 10.1136/gutjnl-2013-306584. Read the full article.
    Cooke, S.L., Shlien, A., Marshall, J., Pipinikas, C.P., Martincorena, I., Tubio, J.M., Li Y, Menzies, A., Mudie, L., Ramakrishna, M., et al. (2014) Processed pseudogenes acquired somatically during cancer development. Nat Commun. 5:3644. Read the full article.
    Tilghman, J., Wu, H., Sang, Y., Shi, X., Guerrero-Cazares, H., Quinones-Hinojosa, A., Eberhart, C.G., Laterra, J., and Ying, M. (2014) HMMR maintains the stemness and tumorigenicity of glioblastoma stem-like cells. Cancer Res. doi: 10.1158/0008-5472.CAN-13-2103. View PubMed abstract.
    Riester, M., Wei, W., Waldron, L., Culhane, A.C., Trippa, L., Oliva, E., Kim, S.H., Michor, F., Huttenhower, C., Parmigiani, G., et al. (2014) Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples. J Natl Cancer Inst. doi: 10.1093/jnci/dju048. View PubMed abstract.
    Dews, M., Tan, G.S., Hultine, S., Raman, P., Choi, J., Duperret, E.K., Lawler, J., Bass, A., and Thomas-Tikhonenko, A. (2014) Masking epistasis between MYC and TGF-β pathways in antiangiogenesis-mediated colon cancer suppression. J Natl Cancer Inst. 106(4):dju043. View PubMed abstract.
    Schuster, K., Venkateswaran, N., Rabellino, A., Girard, L., Pena-Llopis, S., and Scaglioni, P.P. (2014) Nullifying the CDKN2A/B locus promotes mutant K-ras lung tumorigenesis. Mol Cancer Res. 12(6):912-923. View PubMed abstract.
    Pietras, A., Katz, A.M., Ekström, E.J., Wee, B., Halliday, J.J., Pitter, K.L., Werbeck, J.L., Amankulor, N.M., Huse, J.T., and Holland, E.C. (2014) Osteopontin-CD44 signaling in the glioma perivascular niche enhances cancer stem cell phenotypes and promotes aggressive tumor growth. Cell Stem Cell. 14(3):357-369. View PubMed abstract.
    Klco JM, Spencer DH, Miller CA, Griffith M, Lamprecht TL, O'Laughlin M, Fronick C, Magrini V, Demeter RT, Fulton RS, et al. (2014) Functional heterogeneity of genetically defined subclones in acute myeloid leukemia. Cancer Cell. doi: 10.1016/j.ccr.2014.01.031. .
    Tahara, T., Yamamoto, E., Madireddi, P., Suzuki, H., Maruyama, R., Chung, W., Garriga, J., Jelinek, J., Yamano, H.O., Sugai. T., et al. (2014) Colorectal carcinomas with CpG island methylator phenotype 1 frequently contain mutations in chromatin regulators. Gastroenterology. 146(2):530–538.e5. View PubMed abstract.
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