Publications
All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.
Hayano, T., Garg, M., Yin, D., Sudo, M., Kawamata, N., Shi, S., Chien, W., Ding, L.-W., Leong, G., Mori, S., et al. (2013) SOX7 is down-regulated in lung cancer. J Exp Clin Cancer Res. 32:17. Read the full article.
Li, R.-Y., Chen, L.-C., Zhang, H.-Y., Du, W.-Z., Feng, Y., Wang, H.-B., Wen, J.-Q., Liu, X., Li, X.-F., Sun, Y., et al. (2013) MiR-139 inhibits Mcl-1 expression and potentiates TMZ-induced apoptosis in glioma. CNS Neurosci Ther. doi: 10.1111/cns.12089. View PubMed abstract.
Chang, H., Han, J., Borowsky, A., Loss, L., Gray, J., Spellman, P. and Parvin, B. (2013) Invariant delineation of nuclear architecture in glioblastoma multiforme for clinical and molecular association. IEEE Trans Med Imaging. 32(4):670 - 682. View PubMed abstract.
Amankwah, E.K., Thompson, R.C., Nabors, L.B., Olson, J.J., Browning, J.E., Madden, M.H. and Egan, K.M. (2013) SWI/SNF gene variants and glioma risk and outcome. Cancer Epidemiol. 37(2):162–165. View PubMed abstract.
Guessous, F., Alvarado-Velez, M., Marcinkiewicz, L., Zhang, Y., Kim, J., Heister, S., Kefas, B., Godlewski, J., Schiff, D., Purow, B., et al. (2013) Oncogenic effects of miR-10b in glioblastoma stem cells. J Neurooncol. 112(2):153-163. View PubMed abstract.
Hast, B.E., Goldfarb, D., Mulvaney, K.M., Hast, M.A., Siesser, P.F., Yan, F., Hayes, D.N. and Major, M.B. (2013) Proteomic analysis of ubiquitin ligase KEAP1 reveals associated proteins that inhibit NRF2 ubiquitination. Cancer Res. 73(7):2199-2210. View PubMed abstract.
Hong, S., Chen, X., Jin, L. and Xiong, M. (2013) Canonical correlation analysis for RNA-seq co-expression networks. Nucleic Acids Res. 41(8):e95. Read the full article.
Dann, S.G., Golas, J., Miranda, M., Shi, C., Wu, J., Jin, G., Rosfjord, E., Upeslacis, E. and Klippel, A. (2013) p120 catenin is a key effector of a Ras-PKCɛ oncogenic signaling axis. Oncogene. doi:10.1038/onc.2013.91. View PubMed abstract.
Sfakianos, G.P., Iversen, E.S., Whitaker, R., Akushevich, L., Schildkraut, J.M., Murphy, S.K., Marks, J.R. and Berchuck, A. (2013) Validation of ovarian cancer gene expression signatures for survival and subtype in formalin fixed paraffin embedded tissues. Gynecol Oncol. 129(1):159–164. View PubMed abstract.
Shen, H., Fridley, B.L., Song, H., Lawrenson, K., Cunningham, J.M., Ramus, S.J., Cicek, M.S., Tyrer, J., Stram, D., Larson, M.C., et al. (2013) Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer. Nat Commun. 4(1628):doi:10.1038/ncomms2629. Read the full article.
