• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Wang, N., Gong, T., Clarke, R., Chen, L., Shih, I.M., Zhang, Z., Levine, D.A., Xuan, J. and Wang, Y. (2014) UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples. Bioinformatics. doi: 10.1093/bioinformatics/btu607. Read the full article.
    Liu, Q., Zhang, C., Yuan, J., Fu, J., Wu, M., Su, J., Wang, X., Yuan, X., Jiang, W. (2014) PTK7 regulates Id1 expression in CD44-high glioma cells. Neuro Oncol. doi: 10.1093/neuonc/nou227. Read the full article.
    Ivan, M.E., Safaee, M., Oh, T., Clark, A.J., Sun, M.Z., Kim, J., Bloch, O., Jahangiri, A., Phillips, J.J., et al. (2014) Epidermal growth factor-like module containing mucin-like hormone receptor 2 expression in gliomas. J Neurooncol. doi: 10.1007/s11060-014-1606-z. Read the full article.
    Davis, C.F., Ricketts, C.J., Wang, M., Yang, L., Cherniack, A.D., Shen, H., Buhay, C., Kang, H., Kim, S.C., et al (2014) The somatic genomic landscape of chromophobe renal cell carcinoma. Cancer Cell. doi: 10.1016/j.ccr.2014.07.014. Read the full article.
    Li, Y.R., Xian, R.R., Ziober, A., Conejo-Garcia, J., Perales-Puchalt, A., June, C.H., Zhang, P.J. and Tchou, J. (2014) Mesothelin expression is associated with poor outcomes in breast cancer. Breast Cancer Res Treat. doi: 10.1007/s10549-014-3077-5. Read the full article.
    Xu, Y., Guo, X., Sun, J. and Zhao, Z. (2014) Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation. Bioinformatics. doi:10.1093/bioinformatics/btu603. Read the full article.
    Huang, P.J., Lee, C.C., Tan, B.C., Yeh, Y.M., Huang, K.Y., Gan, R.C., Chen, T.W., Lee, C.Y., et al. (2014) Vanno: A visualization-aided variant annotation tool. Hum Mutat.. doi: 10.1002/humu.22684. View PubMed abstract.
    Holmberg Olausson, K., Maire, C.L., Haidar, S., Ling, J., Nister, M. and Ligon, K.L. (2014) Prominin-1 (CD-133) defines both stem and non-stem cell populations in CNS development and gliomas. PLoS One. doi: 10.1371/journal.pone.0106694. .
    Bera, A., VenkataSubbaRao, K., Manoharan, M.S., Hill, P. and Freeman, J.W. (2014) A miRNA signature of chemoresistant mesenchymal phenotype identifies novel molecular targets associated with advanced pancreatic cancer. PLoS One. doi: 10.1371/journal.pone.0106343. Read the full article.
    Teoh, J.P., Park, K.M., Wang, Y., Hu, Q., Kim, S., Wu, G., Huang, S., Maihle, N. and Kim, I.M. (2014) Endothelin-1 Endothelin A receptor-mediated biased signaling is a new player in modulating human ovariancancer cell tumorigenesis. Cell Signal. doi: 10.1016/j.cellsig.2014.08.024. View PubMed abstract.
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