• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Warta, R., Theile, D., Mogler, C., Herpel. E., Grabe, N., Lahrmann, B., Plinkert, P.K., Herold-Mende, C., Weiss, J. and Dyckhoff, G. (2014) Association of drug transporter expression with mortality and progression-free survival in stage IV head and neck squamous cell carcinoma. PLoS One. doi: 10.1371/journal.pone.0108908. Read the full article.
    Despierre, E., Moisse, M., Yesilyurt, B., Sehouli, J., Braicu, I., Mahner, S., Castillo-Tong, D.C., Zeillinger, R. Lambrechts, S., et al. (2014) Somatic copy number alterations predict response to platinum therapy in epithelial ovarian cancer. Gynecol Oncol. doi: 10.1016/j.ygyno.2014.09.01. View PubMed abstract.
    Sepiashvili, L., Waggot, D., Hui, A., Shi, W., Su, S., Ignatchenko, A., Ignatchenko, V., Laureano, M., Huang, S.H., et al. (2014) Integrated omic analysis of oropharyngeal carcinomas reveals HPV-dependent regulation of the AP-1 pathway. Mol Cell Proteomics. doi:10.1074/mcp.M114.041764. Read the full article.
    Yao, L. Tak, Y.G., Berman, B.P., and Farnham, P.J. (2014) Functional annotation of colon cancer risk SNPs. Nat Comm. doi: 10.1038/ncomms6114. Read the full article.
    Dong, Y., Van Tine, B.A., Oyama, T., Wang, P.I., Cheng, E.H., and Hsieh, J.J. (2014) Taspase1 cleaves MLL1 to activate cyclin E for HER2/neu breast tumorigenesis. Cell Res. doi: 10.1038/cr.2014.129. Read the full article.
    Kim, M.H., Bae, J.S., Lim, D.J., Lee, H., Jeon, S.R., Park, G.S. and Jung, C.K. (2014) Quantification of BRAF V600E alleles predicts papillary thyroid cancer progression. Endocr Relat Cancer. doi:10.1530/ERC-14-0147. View PubMed abstract.
    Saddiki, H., McAuliffe, J. and Flaherty, P. (2014) GLAD: A mixed-membership model for heterogeneous tumor subtype classification. Bioinformatics. doi:10.1093/bioinformatics/btu618. Read the full article.
    Huang, C.T., Oyang, Y.J., Huang, H.C. and Juan, H.F. (2014) MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma. Sci Rep. doi: 10.1038/srep06495. Read the full article.
    Huang, C., Oyang, Y., Huang, H., and Juan, H. (2014) MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma. Sci Rep. doi: 10.1038/srep06495. Read the full article.
    Weinhold, N., Jacobsen, A., Schultz, N., Sander, C. and Lee, W. (2014) Genome-wide analysis of noncoding regulatory mutations in cancer. Nat Genet. doi: 10.1038/ng.3101. View PubMed abstract.
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