• National Cancer Institute
  • National Human Genome Research Institute

PublicationsRSS

All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.


    Chen, Q., Hu, Y., Yan, C., Buetow, K. and Meerzaman, D. (2014) Systematic genetic analysis identifies cis-eQTL target genes associated with glioblastoma patient survival. PLoS One. doi: 10.1371/journal.pone.0105393. Read the full article.
    Zhang, C., Han, Y., Huang, H., Qu, L. and Shou, C., (2014) High NR2F2 transcript level is associated with increased survival and its expression inhibits TGF-β-dependent epithelial-mesenchymal transition in breast cancer. Breast Cancer Res Treat. doi: 10.1007/s10549-014-3095-3. View PubMed abstract.
    Zhang, C., Han, Y., Huang, H., Qu,L. and Shou, C. (2014) High NR2F2 transcript level is associated with increased survival and its expression inhibits TGF-β-dependent epithelial-mesenchymal transition in breast cancer. Breast Cancer Res Treat. doi: 10.1007/s10549-014-3095-3. Read the full article.
    Jin, Y., Han, B., Chen, J., Wiedemeyer, R., Orsulic, S., Bose, S., Zhang, X., Karlan, B.Y., Giuliano, A.E., et al. (2014) FOXC1 is a critical mediator of EGFR function in human basal-like breast cancer. Ann Surg Oncol. doi: 10.1245/s10434-014-3980-3. View PubMed abstract.
    * Hoadley, K.A., Yau, C., Wolf, D.M., Cherniack, A.D., Tamborero, D., Ng, S., Leiserson, M.D.M., Niu, B., McLellan, M.D., Uzunnangelov, V., et al. (2014) Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin. Cell. doi: 10.1016/j.cell.2014.06.049. View PubMed abstract.
    Yoo, S., Huang, T., Campbell, J.D., Lee, E., Tu, Z., Geraci, M.W., Powell, C.A., Schadt, E.E., Spira, A., et al. (2014) MODMatcher: Multi-omics data matcher for integrative genomic analysis. PLoS Comput Biol. doi: 10.1371/journal.pcbi.1003790. Read the full article.
    Usuyama, N., Shiraishi, Y., Sato, Y., Kume, H., Homma, Y., Ogawa, S., Miyano, S. and Imoto, S. (2014) HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations. Bioinformatics. doi: 10.1093/bioinformatics/btu537. Read the full article.
    Lin, J., Marquardt, G., Mullapudi, N., Wang, T., Han, W., Shi, M., Keller, S., Zhu, C., Locker, J. and Spivack, S.D. (2014) Lung cancer transcriptomes refined with laser capture microdissection. Am J Pathol. doi: 10.1016/j.ajpath.2014.06.028. View PubMed abstract.
    Lee, H.J., Zhuang, G., Cao, Y., Du, P., Kim, H.J. and Settleman, J. (2014) Drug resistance via feedback activation of Stat3 in oncogene-addicted cancer cells. Cancer Cell. doi: 10.1016/j.ccr.2014.05.019. View PubMed abstract.
    Gao, T., Wang, J., Yang, M. and Li, H. (2014) Transcriptome analysis reveals the effect of oral contraceptive use on cervical cancer. Mol Med Rep. doi: 10.3892/mmr.2014.2466. Read the full article.
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