• National Cancer Institute
  • National Human Genome Research Institute

PublicationsRSS

All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.


    White-Al Habeebm, N.M., Ho, L.T., Olkhov-Mitsel, E., Kron, K., Pethe, V., Lehman, M., Jovanovic, L, Fleshner, N., van der Kwast, T., et al. (2014) Integrated analysis of epigenomic and genomic changes by DNA methylation dependent mechanisms provides potential novel biomarkers for prostate cance. Oncotarget. 5(17):7858-7869. View PubMed abstract.
    Chui, M.H., Wang, Y., Wu, R.C., Seidman, J., Kurman, R.J., Wang, T.L. and Shih, I.M. (2014) Loss of ALDH1A1 expression is an early event in the pathogenesis of ovarian high-grade serous carcinoma. Mod Pathol. doi: 10.1038/modpathol.2014.89. View PubMed abstract.
    Izquierdo-Garcia, J.L., Cai, L.M., Chaumeil, M.M., Eriksson, P., Robinson, A.E., Peiper, R.O., Phillips, J.J. and Ronen, S.M. (2014) Glioma cells with the IDH1 mutation modulate metabolic fractional flux through pyruvate carboxylase. PLoS One. doi: 10.1371/journal.pone.0108289. .
    Xiong, Q., Mukherjee, S. and Furey, T.S. (2014) GSAASeqSP: A toolset for gene set association analysis of RNA-seq data. Sci Rep. doi:  10.1038/srep06347. Read the full article.
    Zhang, J., Jiang, K., Shen, Z., Gao, Z., Lv, L., Ye, Y. and Wang, S. (2014) Expression QTL-based analyses reveal the mechanisms underlying colorectal cancer predisposition. Tumour Biol. doi: 10.1007/s13277-014-2583-8. Read the full article.
    Stransky, N., Cerami, E., Schalm, S., Kim, J.L. and Lengauer, C. (2014) The landscape of kinase fusions in cancer. Nat Commun. doi: 10.1038/ncomms5846. Read the full article.
    Liu, Y., Patel, L., Mills, G.B., Lu, K.H., Sood, A.K., Ding, L., Kucherlapati, R., Mardis, E.R., Levine, D.A., et al. (2014) Knowledge-driven genomic interactions: an application in ovarian cancer. J Natl Cancer Inst. doi: 10.1093/jnci/dju245. Read the full article.
    Wang, N., Gong, T., Clarke, R., Chen, L., Shih, I.M., Zhang, Z., Levine, D.A., Xuan, J. and Wang, Y. (2014) UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples. Bioinformatics. doi: 10.1093/bioinformatics/btu607. Read the full article.
    Liu, Q., Zhang, C., Yuan, J., Fu, J., Wu, M., Su, J., Wang, X., Yuan, X., Jiang, W. (2014) PTK7 regulates Id1 expression in CD44-high glioma cells. Neuro Oncol. doi: 10.1093/neuonc/nou227. Read the full article.
    Ivan, M.E., Safaee, M., Oh, T., Clark, A.J., Sun, M.Z., Kim, J., Bloch, O., Jahangiri, A., Phillips, J.J., et al. (2014) Epidermal growth factor-like module containing mucin-like hormone receptor 2 expression in gliomas. J Neurooncol. doi: 10.1007/s11060-014-1606-z. Read the full article.
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