Publications
All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.
Wiestler, B., Claus, R., Hartlieb, S.A., Schliesser, M.G., Weiss, E.K., Hielscher, T., Platten, M., Dittmann, L.M., Meisner, C., Felsberg, J., et al. (2013) Malignant astrocytomas of elderly patients lack favorable molecular markers: an analysis of the NOA-08 study collective. Neuro Oncol. doi: 10.1093/neuonc/not043. View PubMed abstract.
Leday, G.G.R. and van de Wiel, M.A. (2013) PLRS: a flexible tool for the joint analysis of DNA copy number and mRNA expression data. Bioinformatics. 29(8):1081-1082. View PubMed abstract.
Volinia, S. and Croce, C.M. (2013) Prognostic microRNA/mRNA signature from the integrated analysis of patients with invasive breast cancer. Proc Natl Acad Sci U S A. doi:10.1073/pnas.1304977110. View PubMed abstract.
Wang, C., Pécot, T., Zynger, D.L., Machiraju, R., Shapiro, C.L. and Huang, K. (2013) Identifying survival associated morphological features of triple negative breast cancer using multiple datasets. J Am Med Inform Assoc. doi:10.1136/amiajnl-2012-001538. View PubMed abstract.
Baek, S.-J., Yang, S., Kang, T.-W., Park, S.-M., Kim, Y.S. and Kim, S.-Y. (2013) MENT: methylation and expression database of normal and tumor tissues. Gene. 518(1):194-200. View PubMed abstract.
Akulenko, R. and Helms, V. (2013) DNA co-methylation analysis suggests novel functional associations between gene pairs in breast cancer samples. Hum Mol Genet. doi: 10.1093/hmg/ddt158. View PubMed abstract.
Shen, X., Li, S., Zhang, L., Li, H., Hong, G., Zhou, X.X., Zheng, T., Zhang, W., Hao, C., Shi, T., et al. (2013) An integrated approach to uncover driver genes in breast cancer methylation genomes. PLoS One. 8(4):e61214. Read the full article.
Haapa-Paananen, S., Chen, P., Hellström, K., Kohonen, P., Hautaniemi, S., Kallioniemi, O., and Perälä, M. (2013) Functional profiling of precursor microRNAs identifies microRNAs essential for glioma proliferation. PLoS One. 8(4):e60930. Read the full article.
French, J.D., Ghoussaini, M., Edwards, S.L., Meyer, K.B., Michailidou, K., Ahmed, S., Khan, S., Maranian, M.L., O’Reilly, M., Hillman, K.M., et al. (2013) Functional variants at the 11q13 risk locus for breast cancer regulate cyclin D1 expression through long-range enhancers. Am J Hum Genet. 92(4):489-503. View PubMed abstract.
Hayano, T., Garg, M., Yin, D., Sudo, M., Kawamata, N., Shi, S., Chien, W., Ding, L.-W., Leong, G., Mori, S., et al. (2013) SOX7 is down-regulated in lung cancer. J Exp Clin Cancer Res. 32:17. Read the full article.
