• National Cancer Institute
  • National Human Genome Research Institute

PublicationsRSS

All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.


    Linsley, P.S., Speake, C., Whalen, E., and Chaussabel, D. (2014) Copy number loss of the interferon gene cluster in melanomas is linked to reduced T cell infiltrate and poorpatient prognosis. PLoS One. doi: 10.1371/journal.pone.0109760. Read the full article.
    Neapolitan, R., and Jiang, X. (2014) Inferring aberrant signal transduction pathways in ovarian cancer from TCGA data. Cancer Inform. doi: 10.4137/CIN.S13881. Read the full article.
    Jagga, Z., and Gupta, D. (2014) Classification models for clear cell renal carcinoma stage progression, based on tumor RNAseq expression trained supervised machine learning algorithms. BMC Proc. doi: 10.1186/1753-6561-8-S6-S2. Read the full article.
    Meng, D., Chen, Y., Zhao, Y., Wang, J., Yun, D., Yang, S., Chen, J., Chen, H., and Lu, D. (2014) Expression and prognostic significance of TCTN1 in human glioblastoma. J Transl Med. doi: 10.1186/s12967-014-0288-9. Read the full article.
    Jacob, F., Hitchins, M.P., Fedier, A., Brennan, K., Nixdorf, S., Hacker, N.F., Ward, R. and Heinzelmann-Schwarz, V.A. (2014) Expression of GBGT1 is epigenetically regulated by DNA methylation in ovarian cancer cells. BMC Mol Biol. doi:10.1186/1471-2199-15-24. Read the full article.
    Jacob, F., Hitchins, M.P., Fedier, A., Brennan, K., Nixdorf, S., Hacker, N.F., Ward, R., and Heinzelmann-Schwarz, V.A. (2014) Expression of GBGT1 is epigenetically regulated by DNA methylation in ovarian cancer cells. BMC Mol Biol. doi: 10.1186/1471-2199-15-24. Read the full article.
    Li, Y., Liang, C., Easterbrook, S., Luo, J and Zhang, Z. (2014) Investigating the functional implications of reinforcing feedback loops in transcriptional regulatory networks. Mol Biosyst. doi: 10.1039/C4MB00526K. View PubMed abstract.
    Martin, E.C., Rhodes, L.V., Elliott, S., Krebs, A.E., Nephew, K.P., Flemington, E.K., Collins-Buruow, B.M. and Burow, M.E. (2014) microRNA regulation of mammalian target of rapamycin expression and activity controls estrogen receptor function and RAD001 sensitivity. Mol Cancer. doi:10.1186/1476-4598-13-229. Read the full article.
    Novitskiy, S.V., Forrester, E., Pickup, M.W., Gorska, A.E., Chytil, A., Aakre, M., Polosukhina, D., Owens, P., Yusupova, D.R., et al. (2014) Attenuated transforming growth factor beta signaling promotes metastasis in a model of HER2 mammary carcinogenesis. Breast Cancer Res. doi:10.1186/s13058-014-0425-7. Read the full article.
    Barbano, R., Palumbo, O., Pasculli, B., Galasso, M., Volinia, S., D'Angelo, V., Icolaro, N., Coco, M., Dimitri, L., et al. (2014) A MiRNA signature for defining aggressive phenotype and prognosis in gliomas. PLoS One. doi: 10.1371/journal.pone.0108950. Read the full article.
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