• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    List, M., Hauschild, A.C., Tan, Q., Kruse, T.A., Mollenhauer, J., Baumbach, J., and Batra, R. (2014) Classification of breast cancer subtypes by combining gene expression and DNA methylation data. J Integr Bioinform. 11(2):236. Read the full article.
    Wang, Z., Curry, E., and Montana, G. (2014) Network-guided regression for detecting associations between DNA methylation and gene expression. Bioinformatics. doi: 10.1093/bioinformatics/btu361. View PubMed abstract.
    Iglesia, M.D., Vincent, B.G., Parker, J.S., Hoadley, K.A., Carey, L.A., Perou, C.M., and Serody, J.S. (2014) Prognostic B-cell signatures using mRNA-seq in patients with subtype-specific breast and ovarian cancer. Clin Cancer Res. doi: 10.1158/1078-0432.CCR-13-3368. Read the full article.
    Ping, Y., Zhang, H., Deng, Y., Wang, L., Zhao, H., Pang, L., Fan, H., Xu, C., Li, F., Zhang, Y., et al. (2014) IndividualizedPath: identifying genetic alterations contributing to the dysfunctional pathways in glioblastoma individuals. Mol Biosyst. doi: 10.1039/C4MB00289J. View PubMed abstract.
    Li, Q., Stram, A., Chen, C., Kar, S., Gayther, S., Pharoah, P., Haiman, C., Stranger, B., Kraft, P., and Freedman, M.L. (2014) Expression QTL based analyses reveal candidate causal genes and loci across five tumor types. Hum Mol Genet. doi: 10.1093/hmg/ddu228. View PubMed abstract.
    Thorne, A.H., Meisen, W.H., Russell, L., Yoo, J.Y., Bolyard, C.M., Lathia, J.D., Rich, J., Puduvalli, V.K., Mao, H., Yu, J., et al. (2014) Role of cysteine-rich 61 protein (CCN1) in macrophage-mediated oncolytic herpes simplex virus clearance. Mol Ther. doi: 10.1038/mt.2014.101. View PubMed abstract.
    Malouf, G.G., Su, X., Yao, H., Gao, J., Xiong, L., He, Q., Comperat, E., Couturier, J., Molinie, V., Escudier, B., et al. (2014) Next generation sequencing of translocation renal cell carcinomas reveals novel RNA splicing partners and frequent mutations of chromatin remodeling genes. Clin Cancer Res. doi: 10.1158/1078-0432.CCR-13-3036. View PubMed abstract.
    Li, X., Shi, Y., Yin, Z., Xue, X., and Zhou, B. (2014) An eight-miRNA signature as a potential biomarker for predicting survival in lung adenocarcinoma. J Transl Med. 12(1):159. Read the full article.
    Henderson, S., Chakravarthy, A., Su, X., Boshoff, C., and Fenton, T.R. (2014) APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development. Cell Rep. doi: 10.1016/j.celrep.2014.05.012. Read the full article.
    Li, Y., Liang, C., Wong, K.C., Luo, J., and Zhang, Z. (2014) Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion. Bioinformatics. doi: 10.1093/bioinformatics/btu373. View PubMed abstract.
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