• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Zhang, Y.W., Zheng, Y., Wang, J.Z., Lu, X.X., Wang, Z., Chen, L.B., Guan, X.X., and Tong, J.D. (2014) Integrated analysis of DNA methylation and mRNA expression profiling reveals candidate genes associated with cisplatin resistance in non-small cell lung cancer. Epigenetics. 9(6):. Read the full article.
    Riester, M., Wei, W., Waldron, L., Culhane, A.C., Trippa, L., Oliva, E., Kim, S.H., Michor, F., Huttenhower, C., Parmigiani, G., et al. (2014) Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples. J Natl Cancer Inst. doi: 10.1093/jnci/dju048. View PubMed abstract.
    Torres-García, W., Zheng, S., Sivachenko, A., Vegesna, R., Wang, Q., Yao, R., Berger, M.F., Weinstein, J.N., Getz, G., and Verhaak, R.G. (2014) PRADA: pipeline for RNA sequencing data analysis. Bioinformatics. doi: 10.1093/bioinformatics/btu169. View PubMed abstract.
    Lee, H.J., Lee, H.Y., Lee, J.H., Lee, H., Kang, G., Song, J.S., Kang, J., and Kim, J.H. (2014) Prognostic significance of biallelic loss of PTEN in clear cell renal cell carcinoma. J Urol. doi: 10.1016/j.juro.2014.03.097. View PubMed abstract.
    Munoz, J.L., Rodriguez-Cruz, V., Greco, S.J., Ramkissoon, S.H., Ligon, K.L., and Rameshwar, P. (2014) Temozolomide resistance in glioblastoma cells occurs partly through epidermal growth factor receptor-mediated induction of connexin 43. Cell Death Dis. 5:e1145. Read the full article.
    Smith, A.A., Huang, Y.T., Eliot, M., Houseman, E.A., Marsit, C.J., Wiencke, J.K., and Kelsey, K.T. (2014) A novel approach to the discovery of survival biomarkers in glioblastoma using a joint analysis of DNA methylation and gene expression. Epigenetics. 9(6):doi 10.4161/epi.28571. Read the full article.
    Chan, J.K., Kiet, T.K., Blansit, K., Ramasubbaiah, R., Hilton, J.F., Kapp, D.S., and Matei, D.E. (2014) MiR-378 as a biomarker for response to anti-angiogenic treatment in ovarian cancer. Gynecol Oncol. doi: 10.1016/j.ygyno.2014.03.564. View PubMed abstract.
    Onken, M.D., Winkler, A.E., Kanchi, K.L., Chalivendra, V., Law, J.H., Rickert, C.G., Kallogjeri, D., Judd, N.P., Dunn, G.P., Piccirillo, J.F., et al. (2014) A surprising cross-species conservation in the genomic landscape of mouse and human oral cancer identifies a transcriptional signature predicting metastatic disease. Clin Cancer Res. doi: 10.1158/1078-0432.CCR-14-0205. Read the full article.
    Wu, T.J., Shamsaddini, A., Pan, Y., Smith, K., Crichton, D.J., Simonyan, V., and Mazumder, R. (2014) A framework for organizing cancer-related variations from existing databases, publications and NGS data using a High-performance Integrated Virtual Environment (HIVE). Database (Oxford). doi: 10.1093/database/bau022. Read the full article.
    Guo, S., Tan, L., Pu, W., Wu, J., Xu, K., Wu, J., Li, Q., Ma, Y., Xu, J., Jin, L., et al. (2014) Quantitative assessment of the diagnostic role of APC promoter methylation in non-small cell lung cancer. Clin Epigenetics. 6(1):5. Read the full article.
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