• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Jung, J.G., Stoeck, A., Guan, B., Wu, R.C., Zhu, H., Blackshaw, S., Shih, L., and Wang, T.L. (2014) Notch3 interactome analysis identified WWP2 as a negative regulator of notch3 signaling in ovarian cancer. PLoS One. doi: 10.1371/journal.pgen.1004751. Read the full article.
    Su, X., Malouf, G.G., Chen, Y., Zhang, J., Yao, H., Valero, V., Weinstein, J.N., Spano, J.P., Meric-Bernstam, F., et al. (2014) Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes. Oncotarget. 5(20):9864-9876. Read the full article.
    Knaack, S.A., Siahpirani, A.F., and Roy, S. (2014) A pan-cancer modular regulatory network analysis to identify common and cancer-specific network components. Cancer Inform. doi: 10.4137/CIN.S14058. Read the full article.
    Tang, X., Baheti, S., Shameer, K., Thompson, K.J., Wills, Q., Niu, N., Holcomb, I.N., Boutet, S.C., Ramakrishnan, R., et al. (2014) The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data. Nucleic Acids Res. doi: 10.1093/nar/gku1005. Read the full article.
    Porta-Pardo, E., Hrabe, T., and Godzik, A. (2014) Cancer3D: understanding cancer mutations through protein structures. Nucleic Acids Res. doi: 10.1093/nar/gku1140. Read the full article.
    Li, Y., Liang, M., and Zhang, Z. (2014) Regression analysis of combined gene expression regulation in acute myeloid leukemia. PLoS Comput Bio. doi: 10.1371/journal.pcbi.1003908. Read the full article.
    * The Cancer Genome Atlas Network (2014) Integrated genomic characterization of papillary thyroid carcinoma. Cell. doi: 10.1016/j.cell.2014.09.050. Read the full article.
    Liu, W., Ju, Z., Lu, Y., Mills, G.B., and Akbani, R. (2014) A comprehensive comparison of normalization methods of loading control and variance stabilization of reverse-phase protein array data. Cancer Inform. doi: 10.4137/CIN.S13329. Read the full article.
    Bozdag, S., Li, A., Baysan, M., and Fine, H.A. (2014) Master regulators, regulatory networks, and pathways of glioblastoma subtypes. Cancer Inform. doi: 10.4137/CIN.S14027. Read the full article.
    Favero, F., Joshi, T., Marguard, A.M., Birkbak, N.J., Krzystanek, M., Li, Q., Szallasi, Z., and Eklund, A.C. (2014) Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data. Ann Oncol. doi: 10.1093/annonc/mdu479. Read the full article.
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