• National Cancer Institute
  • National Human Genome Research Institute

PublicationsRSS

All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.


    Budinska, E., Popovici, V., Tejpar, S., D'Ario, G., Lapique, N., Sikora, K.O., Di Narzo, A.F., Yan, P., Hodgson, J.G., Weinrich, S., et al. (2014) Gene expression patterns unveil a new level of molecular heterogeneity in colorectal cancer. J Pathol. 231(1):63-76. Read the full article.
    Zhi, H., Ning, S., Li, X., Li, Y., Wu, W. and Li, X. (2014) A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers. Nucleic Acids. doi:  10.1093/nar/gku575. Read the full article.
    Liu, X.S., Haines, J.E., Mehanna, E.K., Genet, M.D., Ben-Sahra, I., Asara, J.M., Manning, B.D. and Yuan, Z.M. (2014) ZBTB7A acts as a tumor suppressor through the transcriptional repression of glycolysis. Genes Dev. doi: 10.1101/gad.245910.114. View PubMed abstract.
    Marchi, E., Kanapin, A., Magiorkinis, G. and Belshaw, R. (2014) Unfixed endogenous retrovircal insertions in the human population. J Virol. doi:  10.1128/JVI.00919-14. Read the full article.
    Amarasinghe, K.C., Li, J., Hunter, S.M., Ryland, G.L., Cowin, P.A., Campbell, I.G. and Halgamuge, S.K. (2014) Inferring copy number and genotype in tumour exome data. BMC Genomics. doi: 10.1186/1471-2164-15-732. Read the full article.
    Ali, H., Rueda, O.M., Chin, S.F., Curtis, C., Dunning, M.J., Aparicio, S. and Caldas, C. (2014) Genome-driven integrated classification of breast cancer validated in over 7,500 samples. Genome Biol. doi:10.1186/s13059-014-0431-1. Read the full article.
    Eder, K. and Kalman, B. (2014) Molecular hereogeneity of glioblastoma and its clinical relevance. Pathol Oncol Res. doi: 10.1007/s12253-014-9833-3. Read the full article.
    Steystahl, K., Tritschler, I., Szabo, E., Tabatabai, G. and Weller, M. (2014) Differential regulation of TGF-β-induced, ALK-5-mediated VEGF release by SMAD2/3 versus SMAD 1/5/8 signaling in glioblastoma. Neuro Oncol. doi: 10.1093/neuonc/nou218. View PubMed abstract.
    Han, C., Liu, Y., Wan, G., Choi, H.J., Zhao, L., Ivan, C., He, X., Sood, A.K., Zhang, X., et al. (2014) The RNA-binding protein DDX1 promotes primary microRNA maturation and inhibits ovarian tumor progression. Cell Rep. doi: 10.1016/j.celrep.2014.07.058. Read the full article.
    Eckel-Passow, J.E., Igel, D.A., Serie, D.J., Joseph, R.W., Ho, T.H., Cheville, J.C. and Parker, A.S. (2014) Assessing the clinical use of clear cell renal cell carcinoma molecular subtypes identified by RNA expression analysis. Urol Oncol. doi: 10.1016/j.urolonc.2014.07.019. Read the full article.
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