• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Yoo, S., Huang, T., Campbell, J.D., Lee, E., Tu, Z., Geraci, M.W., Powell, C.A., Schadt, E.E., Spira, A., et al. (2014) MODMatcher: Multi-omics data matcher for integrative genomic analysis. PLoS Comput Biol. doi: 10.1371/journal.pcbi.1003790. Read the full article.
    Usuyama, N., Shiraishi, Y., Sato, Y., Kume, H., Homma, Y., Ogawa, S., Miyano, S. and Imoto, S. (2014) HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations. Bioinformatics. doi: 10.1093/bioinformatics/btu537. Read the full article.
    Lin, J., Marquardt, G., Mullapudi, N., Wang, T., Han, W., Shi, M., Keller, S., Zhu, C., Locker, J. and Spivack, S.D. (2014) Lung cancer transcriptomes refined with laser capture microdissection. Am J Pathol. doi: 10.1016/j.ajpath.2014.06.028. View PubMed abstract.
    Lee, H.J., Zhuang, G., Cao, Y., Du, P., Kim, H.J. and Settleman, J. (2014) Drug resistance via feedback activation of Stat3 in oncogene-addicted cancer cells. Cancer Cell. doi: 10.1016/j.ccr.2014.05.019. View PubMed abstract.
    Gao, T., Wang, J., Yang, M. and Li, H. (2014) Transcriptome analysis reveals the effect of oral contraceptive use on cervical cancer. Mol Med Rep. doi: 10.3892/mmr.2014.2466. Read the full article.
    Omuro, A.M., Beal, K., Gutin, P., Karimi, S., Correa, D., Kaley, T.J., DeAngelis, L.M., Chan, T.A., Gavrilovic, I.T., et al. (2014) Phase II study of bevacizumab, temozolomide and hypofractionated stereotactic radiotherapy for newly diagnosed glioblastoma. Clin Cancer Res. doi: 10.1158/1078-0432. View.
    Castillo, A., Paul, A., Sun, B., Huang, T.H., Wang, Y., Yazinski, S.A., Tyler, J., Li, L., You, M.J., et al. (2014) The BRCA1-interacting protein abraxas is required for genomic stability and tumor supression. Cell Rep. doi: 10.1016/j.celrep.2014.06.050. Read the full article.
    Boele, J., Persson, H., Shin, J.W., Ishizu, Y., Newie, I.S., Sokilde, R., Hawkins, S.M., Coarfa, C., Ikeda, K., et al. (2014) PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease. Proc Natl Acad Sci U.S.A.. doi: 10.1073/pnas.1317751111. View PubMed abstract.
    Dobson, J.R., Taipaleenmaki, H., Hu, Y.J., Hong, D., van Wijnin, A.J., Stein, J.L., Stein, G.S., Lian, J.B., Pratap, J. (2014) hsa-mir-30c promotes the invasive phenotype of metastatic breast cancer cells by targeting NOV/CCN3. Cancer Cell Int. doi: 10.1186/s12935-014-0073-0. .
    Tubio, J.M., Li, Y., Ju, Y.S., Martincorena, I., Cooke, S.L., Tojo, M., Gundem, G., Pipinikas, C.P., Zamora, J., et al. (2014) Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science. doi: 10.1126/science.1251343. View PubMed abstract.
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