• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Jacob, F., Hitchins, M.P., Fedier, A., Brennan, K., Nixdorf, S., Hacker, N.F., Ward, R. and Heinzelmann-Schwarz, V.A. (2014) Expression of GBGT1 is epigenetically regulated by DNA methylation in ovarian cancer cells. BMC Mol Biol. doi:10.1186/1471-2199-15-24. Read the full article.
    Li, Y., Liang, C., Easterbrook, S., Luo, J and Zhang, Z. (2014) Investigating the functional implications of reinforcing feedback loops in transcriptional regulatory networks. Mol Biosyst. doi: 10.1039/C4MB00526K. View PubMed abstract.
    Martin, E.C., Rhodes, L.V., Elliott, S., Krebs, A.E., Nephew, K.P., Flemington, E.K., Collins-Buruow, B.M. and Burow, M.E. (2014) microRNA regulation of mammalian target of rapamycin expression and activity controls estrogen receptor function and RAD001 sensitivity. Mol Cancer. doi:10.1186/1476-4598-13-229. Read the full article.
    Novitskiy, S.V., Forrester, E., Pickup, M.W., Gorska, A.E., Chytil, A., Aakre, M., Polosukhina, D., Owens, P., Yusupova, D.R., et al. (2014) Attenuated transforming growth factor beta signaling promotes metastasis in a model of HER2 mammary carcinogenesis. Breast Cancer Res. doi:10.1186/s13058-014-0425-7. Read the full article.
    Barbano, R., Palumbo, O., Pasculli, B., Galasso, M., Volinia, S., D'Angelo, V., Icolaro, N., Coco, M., Dimitri, L., et al. (2014) A MiRNA signature for defining aggressive phenotype and prognosis in gliomas. PLoS One. doi: 10.1371/journal.pone.0108950. Read the full article.
    Warta, R., Theile, D., Mogler, C., Herpel. E., Grabe, N., Lahrmann, B., Plinkert, P.K., Herold-Mende, C., Weiss, J. and Dyckhoff, G. (2014) Association of drug transporter expression with mortality and progression-free survival in stage IV head and neck squamous cell carcinoma. PLoS One. doi: 10.1371/journal.pone.0108908. Read the full article.
    Despierre, E., Moisse, M., Yesilyurt, B., Sehouli, J., Braicu, I., Mahner, S., Castillo-Tong, D.C., Zeillinger, R. Lambrechts, S., et al. (2014) Somatic copy number alterations predict response to platinum therapy in epithelial ovarian cancer. Gynecol Oncol. doi: 10.1016/j.ygyno.2014.09.01. View PubMed abstract.
    Sepiashvili, L., Waggot, D., Hui, A., Shi, W., Su, S., Ignatchenko, A., Ignatchenko, V., Laureano, M., Huang, S.H., et al. (2014) Integrated omic analysis of oropharyngeal carcinomas reveals HPV-dependent regulation of the AP-1 pathway. Mol Cell Proteomics. doi:10.1074/mcp.M114.041764. Read the full article.
    Kim, M.H., Bae, J.S., Lim, D.J., Lee, H., Jeon, S.R., Park, G.S. and Jung, C.K. (2014) Quantification of BRAF V600E alleles predicts papillary thyroid cancer progression. Endocr Relat Cancer. doi:10.1530/ERC-14-0147. View PubMed abstract.
    Saddiki, H., McAuliffe, J. and Flaherty, P. (2014) GLAD: A mixed-membership model for heterogeneous tumor subtype classification. Bioinformatics. doi:10.1093/bioinformatics/btu618. Read the full article.
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