• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Mountzios, G., Rampias, T., and Psyrri, A. (2014) The mutational spectrum of squamous-cell carcinoma of the head and neck: targetable genetic events and clinical impact. Ann Oncol. doi: 10.1093/annonc/mdu143. Read the full article.
    Ngeow, J., Ni, Y., Tohme, R., Song Chen, F., Bebek, G., and Eng, C. (2014) Germline alterations in RASAL1 in Cowden syndrome patients presenting with follicular thyroid cancer and in individuals with apparently sporadic epithelial thyroid cancer. J Clin Endocrinol Metab. doi: http://dx.doi.org/10.1210/jc.2014-1225. View PubMed abstract.
    de Souza, J.E., Fonseca, A.F., Valieris, R., Carraro, D.M., Wang, J.Y., Kolodner, R.D., and de Souza, S.J. (2014) S-score: a scoring system for the identification and prioritization of predicted cancer genes. PLoS One. 9(4):e94147. Read the full article.
    Heim, D., Budczies, J., Stenzinger, A., Treue, D., Hufnagl, P., Denkert, C., Dietel, M., and Klauschen, F. (2014) Cancer beyond organ and tissue specificity: next-generation-sequencing gene mutation data reveal complex genetic similarities across major cancers. Int J Cancer. doi: 10.1002/ijc.28882. View PubMed abstract.
    Zhang, Y.W., Zheng, Y., Wang, J.Z., Lu, X.X., Wang, Z., Chen, L.B., Guan, X.X., and Tong, J.D. (2014) Integrated analysis of DNA methylation and mRNA expression profiling reveals candidate genes associated with cisplatin resistance in non-small cell lung cancer. Epigenetics. 9(6):. Read the full article.
    Riester, M., Wei, W., Waldron, L., Culhane, A.C., Trippa, L., Oliva, E., Kim, S.H., Michor, F., Huttenhower, C., Parmigiani, G., et al. (2014) Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples. J Natl Cancer Inst. doi: 10.1093/jnci/dju048. View PubMed abstract.
    Torres-García, W., Zheng, S., Sivachenko, A., Vegesna, R., Wang, Q., Yao, R., Berger, M.F., Weinstein, J.N., Getz, G., and Verhaak, R.G. (2014) PRADA: pipeline for RNA sequencing data analysis. Bioinformatics. doi: 10.1093/bioinformatics/btu169. View PubMed abstract.
    Lee, H.J., Lee, H.Y., Lee, J.H., Lee, H., Kang, G., Song, J.S., Kang, J., and Kim, J.H. (2014) Prognostic significance of biallelic loss of PTEN in clear cell renal cell carcinoma. J Urol. doi: 10.1016/j.juro.2014.03.097. View PubMed abstract.
    Munoz, J.L., Rodriguez-Cruz, V., Greco, S.J., Ramkissoon, S.H., Ligon, K.L., and Rameshwar, P. (2014) Temozolomide resistance in glioblastoma cells occurs partly through epidermal growth factor receptor-mediated induction of connexin 43. Cell Death Dis. 5:e1145. Read the full article.
    Smith, A.A., Huang, Y.T., Eliot, M., Houseman, E.A., Marsit, C.J., Wiencke, J.K., and Kelsey, K.T. (2014) A novel approach to the discovery of survival biomarkers in glioblastoma using a joint analysis of DNA methylation and gene expression. Epigenetics. 9(6):doi 10.4161/epi.28571. Read the full article.
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