• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Huang, W.Y., Hsu, S.D., Huang, H.Y., Sun, Y.M., Chou, C.H., Weng, S.L., and Huang, H.D. (2014) MethHC: a database of DNA methylation and gene expression in human cancer. Nucleic Acids Res. doi: 10.1093/nar/gku1151. Read the full article.
    Haan, J.C., Labots, M., Rausch, C., Koopman, M., Tol, J., Mekenkamp, L.J., van de Wiel, M.A., Israeli, D., van Essen, H.F., et al. (2014) Genomic landscape of metastatic colorectal cancer. Nat Commun. doi: 10.1038/ncomms6457. Read the full article.
    Wang, B., Sun, F., Dong, N., Sun, Z., Diao, Y., Zheng, C., Sun, J., Yang, Y., and Jiang, D. (2014) MicroRNA-7 directly targets insulin-like growth factor 1 receptor to inhibit cellular growth and glucose metabolism in glioma. Diagn Pathol. doi: 10.1186/s13000-014-0211-y. Read the full article.
    Wang, S., Pandis, I., Johnson, D., Emam, I., Guitton, F., Oehmichen, A., and Guo, Y. (2014) Optimising parallel R correlation matrix calculations on gene expression data using MapReduce. BMC Bioinformatics. doi: 10.1186/s12859-014-0351-9. Read the full article.
    Ma, X., Xiao, L, and Wong, W.H. (2014) Learning regulatory programs by threshold SVD regression. Proc Natl Acad Sci U.S.A.. doi: 10.1073/pnas.1417808111. Read the full article.
    Jung, J.G., Stoeck, A., Guan, B., Wu, R.C., Zhu, H., Blackshaw, S., Shih, L., and Wang, T.L. (2014) Notch3 interactome analysis identified WWP2 as a negative regulator of notch3 signaling in ovarian cancer. PLoS One. doi: 10.1371/journal.pgen.1004751. Read the full article.
    * The Cancer Genome Atlas Network (2014) Integrated genomic characterization of papillary thyroid carcinoma. Cell. doi: 10.1016/j.cell.2014.09.050. Read the full article.
    Bozdag, S., Li, A., Baysan, M., and Fine, H.A. (2014) Master regulators, regulatory networks, and pathways of glioblastoma subtypes. Cancer Inform. doi: 10.4137/CIN.S14027. Read the full article.
    Li, Y., Liang, C., Easterbrook, S., Luo, J and Zhang, Z. (2014) Investigating the functional implications of reinforcing feedback loops in transcriptional regulatory networks. Mol Biosyst. doi: 10.1039/C4MB00526K. View PubMed abstract.
    Martin, E.C., Rhodes, L.V., Elliott, S., Krebs, A.E., Nephew, K.P., Flemington, E.K., Collins-Buruow, B.M. and Burow, M.E. (2014) microRNA regulation of mammalian target of rapamycin expression and activity controls estrogen receptor function and RAD001 sensitivity. Mol Cancer. doi:10.1186/1476-4598-13-229. Read the full article.
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