• National Cancer Institute
  • National Human Genome Research Institute


All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.

    Huang, W.Y., Hsu, S.D., Huang, H.Y., Sun, Y.M., Chou, C.H., Weng, S.L., and Huang, H.D. (2014) MethHC: a database of DNA methylation and gene expression in human cancer. Nucleic Acids Res. doi: 10.1093/nar/gku1151. Read the full article.
    Haan, J.C., Labots, M., Rausch, C., Koopman, M., Tol, J., Mekenkamp, L.J., van de Wiel, M.A., Israeli, D., van Essen, H.F., et al. (2014) Genomic landscape of metastatic colorectal cancer. Nat Commun. doi: 10.1038/ncomms6457. Read the full article.
    Wang, B., Sun, F., Dong, N., Sun, Z., Diao, Y., Zheng, C., Sun, J., Yang, Y., and Jiang, D. (2014) MicroRNA-7 directly targets insulin-like growth factor 1 receptor to inhibit cellular growth and glucose metabolism in glioma. Diagn Pathol. doi: 10.1186/s13000-014-0211-y. Read the full article.
    Zhang, W., Edwards, A., Flemington, E., and Zhang, K. (2014) Somatic mutations favorable to patient survival are predominant in ovarian carcinomas. PLoS One. doi: 10.1371/journal.pone.0112561. Read the full article.
    Zhou, X., Wang, X., Huang, Z., Xu, L., Zhu, W., and Liu, P. (2014) An ER-associated miRNA signature predicts prognosis in ER-positive breast cancer. J Exp Clin Cancer Res. doi: 10.1186/s13046-014-0094-5. Read the full article.
    Stefannson, O.A., Moran, S., gomez, A., Saylos, S., Arribas-Jorba, C., Sandoval, J., Hilmarsdottir, H., Olafsdottir, E., Tryggvadottir, L, Jonasson, J.G., et al. (2014) A DNA methylation-based definition of biologically distinct breast cancer subtypes. Mol Oncol. doi:10.1016/j.molonc.2014.10.012. Read the full article.
    Wang, S., Pandis, I., Johnson, D., Emam, I., Guitton, F., Oehmichen, A., and Guo, Y. (2014) Optimising parallel R correlation matrix calculations on gene expression data using MapReduce. BMC Bioinformatics. doi: 10.1186/s12859-014-0351-9. Read the full article.
    Ma, X., Xiao, L, and Wong, W.H. (2014) Learning regulatory programs by threshold SVD regression. Proc Natl Acad Sci U.S.A.. doi: 10.1073/pnas.1417808111. Read the full article.
    Ju, Z. Liu, W., Roebuck, P.L., Siwak, D.R., Zhang, N., Lu, Y., Davies, M.A., Akbani, R., Weinstein, J.N., Mills, G.B., et al. (2014) Development of a robust classifier for quality control of reverse-phase protein arrays. Bioinformatics. doi:10.1093/bioinformatics/btu736. View the PubMed abstract.
    Osmanbeyoglu, H.U., Pelossof, R., Bromberg, J. F., and Leslie, C.S. (2014) Linking signaling pathways to transcriptional programs in breast cancer. Genome Res. 24(11):1869-1880. Read the full article.
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