TCGA Research Network Publications

The following is a growing list of publications from the TCGA Research Network:

The Cancer Genome Atlas Network. (2015) Genomic classification of cutaneous melanoma. Cell. doi: 10.1016/j.cell.2015.05.044. Read the full article | View associated data files

The Cancer Genome Atlas Network. (2015) Comprehensive, integrative genomic analysis of diffuse lower-grade gliomas. N Engl J Med. doi: 10.1056/NEJMoa1402121. Read the full article | View associated data files

The Cancer Genome Atlas Network. (2015) Comprehensive genomic characterization of head and neck squamous cell carcinomas. Nature. doi: 10.1038/nature14129. Read the full article | View associated data files

Parfenov, M., Pedamallu, C.S., Gehlenborg, N., Freeman, S.S., Danilova, L., Bristow, C.A., Lee, S., Hadjipanayis, A.G., Ivanova, E.V., Wilkerson, M.D., et al. (2014) Characterization of HPV and host genome interactions in primary head and neck cancers. Proc Natl Acad Sci U S A. doi: 10.1073/pnas.1416074111. Read the full article

The Cancer Genome Atlas Research Network. (2014) Integrated genomic characterization of papillary thyroid carcinoma. Cell. doi: 10.1016/j.cell.2014.09.050. Read the full article | View associated data files

Davis, C.F., Ricketts, C.J., Wang, M., Yang, L., Cherniack, A.D., Shen, H., Buhay, C., Kang, H., Kim, S.C., Fahey, C.C., et al. (2014) The somatic genomic landscape of chromophobe renal cell carcinoma. Cancer Cell. doi: 10.1016/j.ccr.2014.07.014. Read the full article | View associated data files

Hoadley, K.A., Yau, C., Wolf, D.M., Cherniack, A.D., Tamborero, D., Ng, S., Leiserson, M.D.M., Niu, B., McLellan, M.D., Uzunangelov, V., et al. (2014) Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin. Cell. doi: 10.1016/j.cell.2014.06.049. Read the full article | View associated data files

The Cancer Genome Atlas Research Network. (2014) Comprehensive molecular characterization of gastric adenocarcinoma. Nature. doi: 10.1038/nature13480. Read the full article | View associated data files

The Cancer Genome Atlas Research Network. (2014) Comprehensive molecular profiling of lung adenocarninoma. Nature. doi: 10.1038/nature13385. Read the full article | View associated data files

The Cancer Genome Atlas Research Network. (2014) Comprehensive molecular characterization of urothelial bladder carcinoma. Nature. doi: 10.1038/nature12965. Read the full article | View associated data files

Brennan, C.W., Verhaak, R.G., McKenna, A., Campos, B., Noushmehr, H., Salama, S.R., Zheng, S., Chakravarty, D., Sanborn, J.Z., Berman, S.H., et al. (2013) The somatic genomic landscape of glioblastoma. Cell.155(2):462-477. Read the full article | View associated data files

The Cancer Genome Atlas Research Network, Weinstein, J.N., Collisson, E.A., Mills, G.B., Shaw, K.R., Ozenberger, B.A., Ellrott, K., Shmulevich, I., Sander, C., and Stuart, J.M. (2013) The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet. 45(10):1113–1120. Read the full article

Yang, J.Y., Yoshihara, K., Tanaka, K., Hatae, M., Masuzaki, H., Itamochi, H., The Cancer Genome Atlas Research Network, Takano, M., Ushijima K, Tanyi, J.L., et al. (2013) Predicting time to ovarian carcinoma recurrence using protein markers. J Clin Invest. doi: 10.1172/JCI68509. Read the full article

The Cancer Genome Atlas Research Network. (2013) Comprehensive molecular characterization of clear cell renal cell carcinoma. Nature. 499(7456):43-49. Read the full article | View associated data files

The Cancer Genome Atlas Research Network. (2013) Integrated genomic characterization of endometrial carcinoma. Nature. 497(7447):67-73. Read the full article | View associated data files

Hakimi, A.A., Ostrovnaya, I., Reva, B., Schultz, N., Chen, Y.B., Gonen, M., Liu, H., Takeda, S., Voss, M.H., Tickoo, S.K. (2013) Adverse outcomes in clear cell renal cell carcinoma with mutations of 3p21 epigenetic regulators BAP1 and SETD2: a report by MSKCC and the KIRC TCGA research network. Clin Cancer Res. doi: 10.1158/1078-0432.CCR-12-3886. Read the full article

The Cancer Genome Atlas Network. (2013) Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N Engl J Med. 368:2059-2074. Read the full article | View associated data files

Verhaak, R.G., Tamayo, P., Yang, J.Y., Hubbard, D., Zhang, H., Creighton, C.J., Fereday, S., Lawrence, M., Carter, S.L., Mermel, C.H. (2012) Prognostically relevant gene signatures of high-grade serous ovarian carcinoma. J Clin Invest. doi: 10.1172/JCI65833. Read the full article | View associated data files

The Cancer Genome Atlas Network. (2012) Comprehensive molecular portraits of human breast tumours. Nature. 490(7418):61-70. Read the full article | View associated data files

The Cancer Genome Atlas Research Network. (2012) Comprehensive genomic characterization of squamous cell lung cancers. Nature. 489(7417):519-525. Read the full article | View associated data files

Larman, T.C., Depalma, S.R., Hadjipanayis, A.G., The Cancer Genome Atlas Research Network, Protopopov, A., Zhang, J., Gabriel, S.B., Chin, L., Seidman, C.E., Kucherlapati, R., et al. (2012) Spectrum of somatic mitochondrial mutations in five cancers. Proc Natl Acad Sci U S A. 109(35):14087-14091. Read the full article

Lee, E., Iskow, R., Yang, L., Gokcumen, O., Haseley, P., Luquette, L.J. 3rd., Lohr, J., Harris, C., Ding, L., Wilson, R., et al. (2012) Landscape of somatic retrotransposition in human cancers. Science. 337(6097):967-971. Read the full article

The Cancer Genome Atlas Research Network (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature. 487(7407):330-337. Read the full article | View associated data files

Creighton, C.J., Hernandez-Herrera, A., Jacobsen, A., Levine, D.A., Mankoo, P., Schultz, N., Du, Y., Zhang, Y., Larsson, E., Sheridan, R., et al. (2012) Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma. PLoS One. 7(3):e34546. Read the full article

Bolton, K.L., Chenevix-Trench, G., Goh, C., Sadetzki, S., Ramus, S.J., Karlan, B.Y., Lambrechts, D., Despierre, E., Barrowdale, D., McGuffog, L., et al. (2012) Association between BRCA1 and BRCA2 mutations and survival in women with invasive epithelial ovarian cancer. JAMA. 307(4):382-390. Read the full article

The Cancer Genome Atlas Research Network (2011) Integrated genomic analyses of ovarian carcinoma. Nature. 474(7353):609-615. View author manuscript | View associated data files

Noushmehr, H., Weisenberger, D.J., Diefes, K., Phillips, H.S., Pujara, K., Berman, B.P., Pan F., Pelloski, K.E., Suhmar, E.P., Bhat, K.P., et al. (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell. 17(5):510-522. View author manuscript | View associated data files

Verhaak, R.G., Hoadley, K.A., Purdom, E., Wang, V., Qi, Y., Wilkerson, M.D., Miller, C.R., Ding, L., Golub, T., Mesirov, J.P., Alexe, G., et al. (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell. 17(1):98-110.View author manuscript | View associated data files

The Cancer Genome Atlas Research Network. (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature. 455(7216):1061-1068. View author manuscript | View associated data files