Publications
All data generated by The Cancer Genome Atlas (TCGA) Research Network are made open to the public through the Data Coordinating Center and the TCGA Data Portal. The following is a growing list of publications from the TCGA Research Network (designated with an *) and from other investigators who have successfully leveraged the TCGA data for their own work.
Zhang, W., Zhang, J., Hoadley, K., Kushwaha, D., Ramakrishnan, V., Li, S., Kang, C., You, Y., Jiang, C., Song, S.W., et al. (2012) miR-181d: a predictive glioblastoma biomarker that downregulates MGMT expression. Neuro Oncol. 14(5):doi:10.1093/neuonc/nos089. View PubMed abstract.
Shinjo, K., Okamoto, Y., An, B., Yokoyama, T., Takeuchi, I., Fujii, M., Osada, H., Usami, N., Hasegawa, Y., Ito, H., et al. (2012) Integrated analysis of genetic and epigenetic alterations reveals CpG island methylator phenotype associated with distinct clinical characters of lung adenocarcinoma. Carcinogenesis. doi: 10.1093/carcin/bgs154. View PubMed abstract.
Boyle, J., Kreisberg, R., Bressler, R. and Killcoyne, S. (2012) Methods for visual mining of genomic and proteomic data atlases. BMC Bioinformatics. 13(1):58. Read the full article.
Shen, R., Mo, Q., Schultz, N., Seshan, V.E., Olshen, A.B., Huse, J., Ladanyi, M. and Sander, C. (2012) Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS One. 7(4):e35236. Read the full article.
Oesper, L., Ritz, A., Aerni, S.J., Drebin, R. and Raphael, B.J. (2012) Reconstructing cancer genomes from paired-end sequencing data. BMC Bioinformatics. 13(Suppl 6):S10. Read the full article.
Thorvaldsdóttir, H., Robinson, J.T. and Mesirov, J.P. (2012) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform. doi: 10.1093/bib/bbs017. View PubMed abstract.
Cheng, Q., Chang, J.T., Geradts, J., Neckers, L.M., Haystead, T., Spector, N. and Lyerly, H.K. (2012) Amplification and high-level expression of heat shock protein 90 marks aggressive phenotypes of human epidermal growth factor receptor 2 negative breast cancer. Breast Cancer Res. 14(2):R62. View PubMed abstract.
Kang, J., D'Andrea, A.D. and Kozono, D. (2012) A DNA Repair Pathway–Focused Score for Prediction of Outcomes in Ovarian Cancer Treated With Platinum-Based Chemotherapy. JCNI. doi: 10.1093/jnci/djs177. Read the full article.
Cheng, W.Y., Kandel, J.J., Yamashiro, D.J., Canoll, P. and Anastassiou, D. (2012) A Multi-Cancer Mesenchymal Transition Gene Expression Signature Is Associated with Prolonged Time to Recurrence in Glioblastoma. PLoS One. 7(4):e34705. Read the full article.
Sohn, I., Jung, W.Y. and Sung, C.O. (2012) Somatic hypermutation and outcomes of platinum based chemotherapy in patients with high grade serous ovarian cancer. Gynecol Oncol. http://dx.doi.org/10.1016/j.bbr.2011.03.031. View PubMed abstract.
